STRINGSTRING
Bra001915 protein (Brassica rapa) - STRING interaction network
"Bra001915" - AT3G23605 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001915AT3G23605 (E=4e-037) | UBX domain-containing protein (148 aa)    
Predicted Functional Partners:
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
     
 
  0.949
Bra035652
AT2G29070 (E=2e-148) | ubiquitin fusion degradation UFD1 family protein (308 aa)
     
 
  0.949
Bra030307
AT2G21270 (E=9e-137) | ubiquitin fusion degradation UFD1 family protein (321 aa)
     
 
  0.949
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
 
  0.945
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
     
 
  0.945
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
 
  0.935
Bra034089
AT3G09840 (E=0.0) CDC48, ATCDC48, CDC48A | CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding (810 aa)
     
 
  0.929
Bra029941
AT4G04180 (E=7e-029) | AAA-type ATPase family protein (205 aa)
     
 
  0.929
Bra029795
AT3G09840 (E=0.0) CDC48, ATCDC48, CDC48A | CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding (809 aa)
     
 
  0.929
Bra029485
AT4G04180 (E=1e-285) | AAA-type ATPase family protein (585 aa)
     
 
  0.929
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]