STRINGSTRING
Bra001923 protein (Brassica rapa) - STRING interaction network
"Bra001923" - AT3G23820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001923AT3G23820 (E=1e-235) GAE6 | GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); UDP-glucuronate 4-epimerase/ catalytic (456 aa)    
Predicted Functional Partners:
Bra030352
AT5G39320 (E=5e-015) | UDP-glucose 6-dehydrogenase, putative (72 aa)
   
 
  0.773
Bra028430
AT5G39320 (E=2e-276) | UDP-glucose 6-dehydrogenase, putative (480 aa)
   
 
  0.773
Bra028234
AT5G39320 (E=2e-276) | UDP-glucose 6-dehydrogenase, putative (480 aa)
   
 
  0.773
Bra026264
AT5G39320 (E=7e-135) | UDP-glucose 6-dehydrogenase, putative (247 aa)
   
 
  0.773
Bra025395
AT5G39320 (E=3e-037) | UDP-glucose 6-dehydrogenase, putative (95 aa)
   
 
  0.773
Bra024708
AT1G26570 (E=1e-259) UGD1, ATUGD1 | UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding / catalytic/ coenzyme binding / oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (481 aa)
   
 
  0.773
Bra023520
AT5G15490 (E=9e-265) | UDP-glucose 6-dehydrogenase, putative (621 aa)
   
 
  0.773
Bra008695
AT5G15490 (E=1e-275) | UDP-glucose 6-dehydrogenase, putative (480 aa)
   
 
  0.773
Bra006303
AT5G15490 (E=4e-277) | UDP-glucose 6-dehydrogenase, putative (480 aa)
   
 
  0.773
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
       
  0.748
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]