STRINGSTRING
Bra001929 protein (Brassica rapa) - STRING interaction network
"Bra001929" - AT3G24140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001929AT3G24140 (E=4e-146) FMA | FMA (FAMA); DNA binding / transcription activator/ transcription factor (405 aa)    
Predicted Functional Partners:
Bra017533
AT5G46690 (E=5e-077) bHLH071 | bHLH071 (beta HLH protein 71); DNA binding / transcription factor (289 aa)
       
 
0.906
Bra025007
AT5G46690 (E=5e-082) bHLH071 | bHLH071 (beta HLH protein 71); DNA binding / transcription factor (274 aa)
       
 
0.905
Bra031852
AT5G65640 (E=1e-150) bHLH093 | bHLH093 (beta HLH protein 93); DNA binding / transcription factor (358 aa)
       
 
  0.657
Bra024404
AT5G65640 (E=7e-149) bHLH093 | bHLH093 (beta HLH protein 93); DNA binding / transcription factor (359 aa)
       
 
0.632
Bra016749
AT1G12860 (E=2e-129) SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding / transcription factor (433 aa)
       
 
0.595
Bra025226
AT3G26744 (E=2e-192) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor (497 aa)
       
 
0.587
Bra019658
AT1G14350 (E=1e-199) FLP, AtMYB124, MYB124 | FLP (FOUR LIPS); DNA binding / transcription factor (438 aa)
           
  0.576
Bra026578
AT2G02820 (E=5e-207) MYB88 | MYB88 (myb domain protein 88); DNA binding / transcription factor (476 aa)
           
  0.563
Bra027792
AT1G63700 (E=0.0) YDA, MAPKKK4 | YDA (YODA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (878 aa)
           
  0.543
Bra031145
AT2G20875 (E=3e-038) EPF1 | EPF1 (EPIDERMAL PATTERNING FACTOR 1) (102 aa)
           
  0.541
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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