STRINGSTRING
Bra001935 protein (Brassica rapa) - STRING interaction network
"Bra001935" - AT3G23980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001935AT3G23980 (E=7e-237) | unknown protein (695 aa)    
Predicted Functional Partners:
Bra032169
AT2G23380 (E=0.0) CLF, ICU1, SDG1, SET1 | CLF (CURLY LEAF); transcription factor (907 aa)
       
 
  0.890
Bra036300
AT4G02020 (E=6e-139) EZA1, SWN, SDG10 | SWN (SWINGER); transcription factor (780 aa)
     
 
  0.628
Bra033334
AT1G02580 (E=3e-195) MEA, EMB173, FIS1, SDG5 | MEA (MEDEA); sequence-specific DNA binding / transcription factor (638 aa)
       
 
  0.491
Bra032592
AT1G02580 (E=2e-116) MEA, EMB173, FIS1, SDG5 | MEA (MEDEA); sequence-specific DNA binding / transcription factor (639 aa)
       
 
  0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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