STRINGSTRING
Bra001943 protein (Brassica rapa) - STRING interaction network
"Bra001943" - AT3G24315 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001943AT3G24315 (E=2e-054) AtSec20 | AtSec20 (202 aa)    
Predicted Functional Partners:
Bra031788
AT1G11890 (E=4e-121) SEC22, ATSEC22 | SEC22; transporter (479 aa)
         
  0.549
Bra029128
AT5G52270 (E=8e-077) | vesicle transport protein-related (195 aa)
         
  0.549
Bra019723
AT1G11890 (E=3e-119) SEC22, ATSEC22 | SEC22; transporter (225 aa)
         
  0.549
Bra016806
AT1G11890 (E=8e-122) SEC22, ATSEC22 | SEC22; transporter (218 aa)
         
  0.549
Bra022921
AT2G32900 (E=8e-202) ATZW10 | ATZW10 (758 aa)
           
  0.429
Bra005547
AT2G32900 (E=5e-186) ATZW10 | ATZW10 (753 aa)
           
  0.429
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]