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Bra001949 protein (Brassica rapa) - STRING interaction network
"Bra001949" - AT3G24460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001949AT3G24460 (E=3e-210) | TMS membrane family protein / tumour differentially expressed (TDE) family protein (411 aa)    
Predicted Functional Partners:
Bra040314
AT2G45360 (E=4e-096) | unknown protein (223 aa)
           
  0.591
Bra004904
AT2G45360 (E=3e-092) | unknown protein (221 aa)
           
  0.591
Bra036805
AT5G67370 (E=6e-154) | unknown protein (320 aa)
           
  0.502
Bra022221
AT3G17520 (E=1e-077) | late embryogenesis abundant domain-containing protein / LEA domain-containing protein (298 aa)
           
  0.499
Bra033474
AT1G65790 (E=3e-162) ARK1 | ARK1 (A. THALIANA RECEPTOR KINASE 1); kinase/ protein kinase/ protein serine/threonine kinase/ transmembrane receptor protein kinase (770 aa)
           
  0.436
Bra027089
AT1G61370 (E=0.0) | S-locus lectin protein kinase family protein (1602 aa)
           
  0.436
Bra026363
AT4G27290 (E=2e-204) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (828 aa)
           
  0.436
Bra019059
AT4G27290 (E=1e-194) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (818 aa)
           
  0.436
Bra013522
AT4G21380 (E=0.0) ARK3 | ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase (846 aa)
           
  0.436
Bra000261
AT4G27290 (E=4e-199) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (797 aa)
           
  0.436
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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