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Bra001950 protein (Brassica rapa) - STRING interaction network
"Bra001950" - AT3G24480 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001950AT3G24480 (E=2e-198) | leucine-rich repeat family protein / extensin family protein (756 aa)    
Predicted Functional Partners:
Bra032889
AT1G28290 (E=3e-063) AGP31 | AGP31 (arabinogalactan-protein 31) (339 aa)
           
  0.475
Bra037495
AT5G48300 (E=4e-268) ADG1, APS1 | ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase ; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (512 aa)
           
  0.457
Bra015135
AT5G48300 (E=8e-261) ADG1, APS1 | ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase ; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (520 aa)
           
  0.457
Bra011803
AT4G38040 (E=7e-201) | exostosin family protein (413 aa)
           
  0.418
Bra010631
AT4G38040 (E=2e-197) | exostosin family protein (412 aa)
           
  0.418
Bra020153
AT5G21160 (E=1e-251) | La domain-containing protein / proline-rich family protein (816 aa)
           
  0.414
Bra002362
AT5G21160 (E=1e-203) | La domain-containing protein / proline-rich family protein (834 aa)
           
  0.414
Bra028631
AT5G09530 (E=8e-060) | hydroxyproline-rich glycoprotein family protein (312 aa)
           
  0.414
Bra006025
AT5G09530 (E=2e-016) | hydroxyproline-rich glycoprotein family protein (274 aa)
           
  0.414
Bra029890
AT3G11030 (E=1e-205) | unknown protein (447 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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