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Bra001953 protein (Brassica rapa) - STRING interaction network
"Bra001953" - AT2G15970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001953AT2G15970 (E=2e-070) COR413-PM1, WCOR413, WCOR413-LIKE, ATCOR413-PM1, FL3-5A3 | COR413-PM1 (197 aa)    
Predicted Functional Partners:
Bra004423
AT2G47890 (E=6e-097) | zinc finger (B-box type) family protein (334 aa)
           
  0.483
Bra016559
AT1G18335 (E=2e-097) | GCN5-related N-acetyltransferase (GNAT) family protein (251 aa)
           
  0.459
Bra011410
AT4G33060 (E=2e-165) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (494 aa)
           
  0.406
Bra006182
AT5G13120 (E=1e-118) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (257 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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