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Bra001964 protein (Brassica rapa) - STRING interaction network
"Bra001964" - AT3G42170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001964AT3G42170 (E=1e-010) | DNA binding (250 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
           
  0.495
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
           
  0.495
Bra002367
AT5G21222 (E=0.0) | protein kinase family protein (838 aa)
           
  0.448
Bra010652
AT4G39850 (E=0.0) PXA1, PED3, CTS | PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances (1433 aa)
           
  0.435
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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