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Bra001970 protein (Brassica rapa) - STRING interaction network
"Bra001970" - AT4G34450 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra001970AT4G34450 (E=0.0) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (887 aa)    
Predicted Functional Partners:
Bra011848
AT1G62020 (E=1e-278) | coatomer protein complex, subunit alpha, putative (733 aa)
     
  0.999
Bra024005
AT4G31480 (E=0.0) | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (948 aa)
     
  0.999
Bra010234
AT4G31480 (E=0.0) | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (948 aa)
     
  0.999
Bra033630
AT1G62020 (E=0.0) | coatomer protein complex, subunit alpha, putative (1364 aa)
     
  0.999
Bra033629
AT2G21390 (E=0.0) | coatomer protein complex, subunit alpha, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1220 aa)
     
  0.999
Bra031186
AT2G21390 (E=3e-250) | coatomer protein complex, subunit alpha, putative (1227 aa)
     
  0.999
Bra011849
AT1G62020 (E=0.0) | coatomer protein complex, subunit alpha, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1188 aa)
     
  0.999
Bra010674
AT2G21390 (E=0.0) | coatomer protein complex, subunit alpha, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1222 aa)
     
  0.999
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
  0.998
Bra005835
AT5G05010 (E=2e-222) | clathrin adaptor complexes medium subunit-related (896 aa)
     
  0.989
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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