STRINGSTRING
Bra001973 protein (Brassica rapa) - STRING interaction network
"Bra001973" - AT2G16270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001973AT2G16270 (E=1e-101) | unknown protein (700 aa)    
Predicted Functional Partners:
Bra030733
AT1G08560 (E=9e-128) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (304 aa)
     
        0.510
Bra030533
AT1G03510 (E=8e-207) | pentatricopeptide (PPR) repeat-containing protein (392 aa)
           
  0.510
Bra018615
AT1G08560 (E=7e-130) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (307 aa)
     
        0.510
Bra014866
AT1G24380 (E=5e-101) | unknown protein (267 aa)
           
  0.510
Bra040790
AT1G65570 (E=2e-147) | polygalacturonase, putative / pectinase, putative (399 aa)
           
  0.509
Bra004119
AT1G65570 (E=4e-194) | polygalacturonase, putative / pectinase, putative (397 aa)
           
  0.509
Bra027569
AT5G44730 (E=2e-136) | haloacid dehalogenase-like hydrolase family protein (252 aa)
           
  0.410
Bra025109
AT5G44730 (E=7e-136) | haloacid dehalogenase-like hydrolase family protein (252 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]