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Bra001974 protein (Brassica rapa) - STRING interaction network
"Bra001974" - AT2G16280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001974AT2G16280 (E=4e-272) KCS9 | KCS9 (3-KETOACYL-COA SYNTHASE 9); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (507 aa)    
Predicted Functional Partners:
Bra040272
AT3G06470 (E=4e-117) | GNS1/SUR4 membrane family protein (294 aa)
         
  0.628
Bra029580
AT3G06470 (E=4e-111) | GNS1/SUR4 membrane family protein (273 aa)
         
  0.628
Bra033983
AT1G67730 (E=7e-163) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (319 aa)
         
  0.549
Bra004251
AT1G67730 (E=4e-164) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (318 aa)
         
  0.549
Bra015315
AT1G04420 (E=2e-182) | aldo/keto reductase family protein (420 aa)
           
  0.501
Bra005650
AT2G31680 (E=2e-114) AtRABA5d | AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding (219 aa)
       
 
  0.423
Bra002367
AT5G21222 (E=0.0) | protein kinase family protein (838 aa)
           
  0.405
Bra032801
AT1G24470 (E=2e-145) KCR2 | short-chain dehydrogenase/reductase (SDR) family protein (303 aa)
         
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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