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Bra001986 protein (Brassica rapa) - STRING interaction network
"Bra001986" - AT5G42180 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
Bra001986AT5G42180 (E=1e-156) | peroxidase 64 (PER64) (P64) (PRXR4) ; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (317 aa)    
Predicted Functional Partners:
Bra034677
AT4G35160 (E=9e-184) | O-methyltransferase family 2 protein (368 aa)
     
 
    0.550
Bra017700
AT4G35160 (E=3e-187) | O-methyltransferase family 2 protein (367 aa)
     
 
    0.550
Bra017699
AT4G35160 (E=4e-184) | O-methyltransferase family 2 protein (366 aa)
     
 
    0.550
Bra026508
AT1G28430 (E=2e-172) CYP705A24 | CYP705A24; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (507 aa)
     
 
    0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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