STRINGSTRING
Bra002006 protein (Brassica rapa) - STRING interaction network
"Bra002006" - AT5G05070 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002006AT5G05070 (E=4e-117) | zinc ion binding (761 aa)    
Predicted Functional Partners:
Bra025932
AT1G61480 (E=0.0) | S-locus protein kinase, putative (1348 aa)
       
      0.612
Bra016571
AT1G18070 (E=7e-207) | EF-1-alpha-related GTP-binding protein, putative (709 aa)
       
      0.612
Bra037523
AT5G47880 (E=3e-233) ERF1-1 | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor (434 aa)
       
      0.607
Bra034244
AT3G26618 (E=7e-247) ERF1-3 | ERF1-3 (eukaryotic release factor 1-3); translation release factor (435 aa)
       
      0.607
Bra020726
AT5G47880 (E=6e-032) ERF1-1 | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor (260 aa)
       
      0.607
Bra016748
AT1G12920 (E=1e-245) ERF1-2 | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor (435 aa)
       
      0.607
Bra037407
AT4G00840 (E=6e-062) | zinc ion binding (270 aa)
           
  0.483
Bra013641
AT4G22750 (E=2e-031) | zinc finger (DHHC type) family protein (108 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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