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Bra002008 protein (Brassica rapa) - STRING interaction network
"Bra002008" - AT3G44160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002008AT3G44160 (E=2e-174) | chloroplast outer membrane protein-related (1136 aa)    
Predicted Functional Partners:
Bra035524
AT5G35930 (E=2e-238) | AMP-dependent synthetase and ligase family protein (1062 aa)
     
 
  0.928
Bra020036
AT5G19370 (E=2e-062) | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (301 aa)
   
 
  0.662
Bra039913
AT2G18040 (E=6e-060) PIN1AT | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1); peptidyl-prolyl cis-trans isomerase (119 aa)
   
 
  0.643
Bra024710
AT1G26550 (E=2e-059) | peptidyl-prolyl cis-trans isomerase PPIC-type family protein (143 aa)
   
 
  0.643
Bra024480
AT2G18040 (E=1e-060) PIN1AT | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1); peptidyl-prolyl cis-trans isomerase (119 aa)
   
 
  0.643
Bra016275
AT1G26550 (E=1e-060) | peptidyl-prolyl cis-trans isomerase PPIC-type family protein (142 aa)
   
 
  0.643
Bra025641
AT1G02520 (E=1e-034) PGP11 | PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (208 aa)
   
   
  0.639
Bra038600
AT5G63000 (E=1e-104) | unknown protein (201 aa)
       
      0.612
Bra022259
AT3G17910 (E=3e-163) SURF1 | SURF1 (SURFEIT 1) (349 aa)
       
      0.598
Bra021283
AT3G17910 (E=3e-153) SURF1 | SURF1 (SURFEIT 1) (340 aa)
       
      0.598
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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