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Bra002009 protein (Brassica rapa) - STRING interaction network
"Bra002009" - AT5G26120 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra002009AT5G26120 (E=5e-145) ATASD2, ASD2 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds (621 aa)    
Predicted Functional Partners:
Bra023384
AT5G12950 (E=0.0) | catalytic (863 aa)
 
          0.697
Bra006171
AT5G12950 (E=0.0) | catalytic (857 aa)
 
          0.695
Bra018587
AT1G09010 (E=0.0) | glycoside hydrolase family 2 protein (937 aa)
 
   
    0.571
Bra030751
AT1G09010 (E=0.0) | glycoside hydrolase family 2 protein (936 aa)
 
   
    0.565
Bra024441
AT5G67540 (E=8e-233) | glycosyl hydrolase family protein 43 (469 aa)
   
     
  0.500
Bra036036
AT3G49880 (E=8e-255) | glycosyl hydrolase family protein 43 (463 aa)
   
     
  0.497
Bra029980
AT3G49880 (E=5e-244) | glycosyl hydrolase family protein 43 (461 aa)
   
     
  0.496
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
 
   
    0.465
Bra024086
AT4G30310 (E=2e-260) | ribitol kinase, putative (563 aa)
         
  0.459
Bra022676
AT5G53850 (E=1e-263) | haloacid dehalogenase-like hydrolase family protein (501 aa)
         
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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