STRINGSTRING
Bra002011 protein (Brassica rapa) - STRING interaction network
"Bra002011" - AT2G16950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002011AT2G16950 (E=0.0) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter (881 aa)    
Predicted Functional Partners:
Bra035888
AT5G62600 (E=4e-286) | transportin-SR-related (1201 aa)
     
 
  0.952
Bra010101
AT5G62600 (E=0.0) | transportin-SR-related (973 aa)
     
 
  0.952
Bra035562
AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
       
 
  0.941
Bra020079
AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (721 aa)
       
 
  0.941
Bra006530
AT5G20010 (E=2e-118) RAN-1, RAN1, ATRAN1 | RAN-1; GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
       
 
  0.941
Bra002926
AT5G55190 (E=4e-119) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
       
 
  0.941
Bra003116
AT5G44340 (E=6e-072) TUB4 | TUB4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (233 aa)
       
      0.904
Bra003116.1-P
AT5G44340 (E=6e-072) TUB4 | TUB4; structural constituent of cytoskeleton (233 aa)
       
      0.904
Bra026329
AT4G27640 (E=0.0) | importin beta-2 subunit family protein (1049 aa)
     
 
0.900
Bra019039
AT4G27640 (E=0.0) | importin beta-2 subunit family protein (1049 aa)
     
 
0.900
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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