STRINGSTRING
Bra002015 protein (Brassica rapa) - STRING interaction network
"Bra002015" - AT2G17000 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002015AT2G17000 (E=4e-254) | mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein (898 aa)    
Predicted Functional Partners:
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
              0.537
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
              0.537
Bra041099
Uncharacterized protein (698 aa)
              0.535
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
         
  0.507
Bra000908
AT4G01900 (E=1e-084) PII, GLB1 | GLB1 (GLNB1 HOMOLOG); acetylglutamate kinase regulator (196 aa)
       
      0.506
Bra012479
AT1G25400 (E=8e-086) | unknown protein (288 aa)
           
  0.499
Bra008267
AT1G76600 (E=2e-075) | unknown protein (212 aa)
           
  0.499
Bra004841
AT2G44500 (E=6e-155) | unknown protein (529 aa)
           
  0.499
Bra003714
AT1G76600 (E=3e-072) | unknown protein (210 aa)
           
  0.499
Bra027179
AT3G16260 (E=0.0) TRZ4 | TRZ4 (TRNASE Z 4); 3’-tRNA processing endoribonuclease/ catalytic (925 aa)
         
  0.441
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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