STRINGSTRING
Bra002021 protein (Brassica rapa) - STRING interaction network
"Bra002021" - AT2G17120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002021AT2G17120 (E=2e-116) LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR) (364 aa)    
Predicted Functional Partners:
Bra031293
AT3G21630 (E=2e-277) CERK1, LYSM RLK1 | CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1); kinase/ receptor signaling protein/ transmembrane receptor protein kinase (616 aa)
     
   
  0.490
Bra040550
AT3G01840 (E=2e-211) | protein kinase family protein (599 aa)
           
  0.481
Bra027929
AT1G56570 (E=1e-312) | pentatricopeptide (PPR) repeat-containing protein (604 aa)
           
  0.406
Bra021861
AT2G33580 (E=1e-109) | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (440 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]