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Bra002028 protein (Brassica rapa) - STRING interaction network
"Bra002028" - AT2G17200 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002028AT2G17200 (E=1e-203) | ubiquitin family protein (550 aa)    
Predicted Functional Partners:
Bra000537
AT2G26590 (E=5e-131) | adhesion regulating molecule family (304 aa)
       
 
  0.794
Bra010735
AT4G38630 (E=8e-146) RPN10, MCB1, ATMCB1, MBP1 | RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor (383 aa)
       
 
  0.787
Bra033573
AT4G38630 (E=2e-141) RPN10, MCB1, ATMCB1, MBP1 | RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor (381 aa)
       
 
  0.784
Bra037730
AT2G43160 (E=7e-133) | epsin N-terminal homology (ENTH) domain-containing protein (1537 aa)
     
  0.636
Bra022160
AT3G16460 (E=4e-169) | jacalin lectin family protein (674 aa)
       
      0.617
Bra021179
AT3G16460 (E=1e-153) | jacalin lectin family protein (452 aa)
       
      0.617
Bra010028
AT5G49570 (E=0.0) AtPNG1 | AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1); catalytic/ peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase (722 aa)
       
      0.613
Bra028408
AT5G38470 (E=1e-140) | DNA repair protein RAD23, putative (382 aa)
         
  0.569
Bra028184
AT5G38470 (E=1e-134) | DNA repair protein RAD23, putative (378 aa)
         
  0.569
Bra040195
AT3G04460 (E=5e-095) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding ; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (381 aa)
       
      0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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