STRINGSTRING
Bra002034 protein (Brassica rapa) - STRING interaction network
"Bra002034" - AT2G17230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002034AT2G17230 (E=5e-179) EXL5 | EXL5 (EXORDIUM LIKE 5) (358 aa)    
Predicted Functional Partners:
Bra019966
AT1G10020 (E=1e-206) | unknown protein (451 aa)
     
   
  0.586
Bra002049
AT2G17300 (E=3e-014) | unknown protein (143 aa)
           
  0.505
Bra002025
AT2G17150 (E=0.0) | RWP-RK domain-containing protein (896 aa)
           
  0.499
Bra018467
AT1G10020 (E=1e-166) | unknown protein (447 aa)
     
   
  0.484
Bra016737
AT1G13200 (E=1e-165) | F-box family protein (424 aa)
           
  0.441
Bra022002
AT5G45950 (E=8e-171) | GDSL-motif lipase/hydrolase family protein (345 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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