STRINGSTRING
Bra002035 protein (Brassica rapa) - STRING interaction network
"Bra002035" - AT2G17240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002035AT2G17240 (E=5e-023) | unknown protein (149 aa)    
Predicted Functional Partners:
Bra009319
AT5G08100 (E=6e-165) | L-asparaginase / L-asparagine amidohydrolase (315 aa)
           
  0.576
Bra016359
AT1G23160 (E=3e-282) | auxin-responsive GH3 family protein (585 aa)
           
  0.573
Bra027187
AT3G16150 (E=3e-174) | L-asparaginase, putative / L-asparagine amidohydrolase, putative (324 aa)
           
  0.483
Bra021164
AT3G16150 (E=3e-174) | L-asparaginase, putative / L-asparagine amidohydrolase, putative (325 aa)
           
  0.483
Bra024569
AT1G23200 (E=1e-255) | pectinesterase family protein (549 aa)
           
  0.476
Bra028596
AT5G10170 (E=1e-286) ATMIPS3, MIPS3 | MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3); binding / catalytic/ inositol-3-phosphate synthase (510 aa)
           
  0.472
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]