STRINGSTRING
Bra002036 protein (Brassica rapa) - STRING interaction network
"Bra002036" - AT2G17250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002036AT2G17250 (E=5e-094) EMB2762 | EMB2762 (EMBRYO DEFECTIVE 2762) (460 aa)    
Predicted Functional Partners:
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
  0.998
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
  0.998
Bra039543
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein (944 aa)
     
    0.998
Bra005881
AT2G47990 (E=4e-225) SWA1, EDA13, EDA19 | SWA1 (SLOW WALKER1); nucleotide binding (533 aa)
     
    0.998
Bra023582
AT5G16750 (E=0.0) TOZ | TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (868 aa)
     
    0.998
Bra008598
AT5G16750 (E=0.0) TOZ | TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (868 aa)
     
    0.998
Bra030096
AT1G31660 (E=2e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (244 aa)
     
  0.998
Bra014995
AT1G31660 (E=2e-030) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (148 aa)
     
  0.998
Bra014911
AT1G31660 (E=5e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (707 aa)
     
  0.998
Bra002529
AT4G04940 (E=3e-054) | transducin family protein / WD-40 repeat family protein (201 aa)
     
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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