STRINGSTRING
Bra002038 protein (Brassica rapa) - STRING interaction network
"Bra002038" - AT3G11410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002038AT3G11410 (E=9e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (380 aa)    
Predicted Functional Partners:
Bra012635
AT4G17870 (E=6e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Streptomyces cyclase/dehydrase (InterPro-IPR005031); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G46790.1); Has 177 Blast hits to 177 proteins in 18 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (191 aa)
       
  0.998
Bra024995
AT5G46790 (E=4e-081) | unknown protein (210 aa)
       
  0.997
Bra007772
AT2G26040 (E=3e-086) | Bet v I allergen family protein (188 aa)
       
  0.997
Bra009113
AT5G05440 (E=2e-112) | unknown protein (204 aa)
       
  0.997
Bra000052
AT2G38310 (E=2e-101) | unknown protein (207 aa)
       
  0.997
Bra011481
AT4G33950 (E=3e-191) OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (362 aa)
   
  0.996
Bra012897
AT3G50500 (E=9e-184) SPK-2-2, SNRK2-2, SNRK2.2, SRK2D | SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2); kinase/ protein kinase (361 aa)
   
  0.995
Bra012113
AT5G66880 (E=1e-178) SNRK2-3, SNRK2.3, SRK2I | SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase (357 aa)
   
  0.995
Bra017615
AT4G33950 (E=6e-188) OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (362 aa)
   
  0.994
Bra013334
AT4G18620 (E=6e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- Bet v I allergen family protein (TAIR-AT5G45870.1); Has 190 Blast hits to 190 proteins in 20 species- Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (166 aa)
       
  0.992
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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