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Bra002047 protein (Brassica rapa) - STRING interaction network
"Bra002047" - AT2G17265 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002047AT2G17265 (E=1e-166) HSK | HSK (HOMOSERINE KINASE); homoserine kinase (370 aa)    
Predicted Functional Partners:
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
 
  0.999
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
 
  0.999
Bra010315
AT4G29840 (E=1e-271) MTO2, TS | MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (525 aa)
   
 
  0.998
Bra036724
AT4G29840 (E=2e-255) MTO2, TS | MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (524 aa)
   
 
  0.998
Bra011140
AT4G29840 (E=8e-282) MTO2, TS | MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (524 aa)
   
 
  0.998
Bra008051
AT1G72810 (E=3e-270) | threonine synthase, putative (518 aa)
   
 
  0.998
Bra002352
AT5G21060 (E=4e-162) | homoserine dehydrogenase family protein (378 aa)
 
  0.985
Bra039144
AT3G01120 (E=6e-221) MTO1, CGS, ATCYS1, CGS1 | MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (530 aa)
   
 
  0.946
Bra014648
AT3G57050 (E=9e-221) CBL | CBL (cystathionine beta-lyase); cystathionine beta-lyase (465 aa)
   
 
  0.946
Bra007296
AT3G57050 (E=7e-195) CBL | CBL (cystathionine beta-lyase); cystathionine beta-lyase (403 aa)
   
 
  0.946
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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