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Bra002073 protein (Brassica rapa) - STRING interaction network
"Bra002073" - AT2G17560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002073AT2G17560 (E=1e-034) HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (157 aa)    
Predicted Functional Partners:
Bra032544
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding (1643 aa)
     
  0.942
Bra035286
AT4G10710 (E=0.0) SPT16 | SPT16 (global transcription factor C) (963 aa)
     
  0.918
Bra000719
AT4G10710 (E=0.0) SPT16 | SPT16 (global transcription factor C) (1168 aa)
     
  0.918
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
     
  0.891
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
       
  0.863
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.854
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
       
      0.846
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
       
      0.846
Bra002571
AT3G46520 (E=1e-217) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (605 aa)
       
  0.798
Bra035499
AT1G32750 (E=0.0) HAF01, HAF1, HAC13, GTD1, TAF1 | HAF01; DNA binding / histone acetyltransferase (1893 aa)
       
  0.761
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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