STRINGSTRING
Bra002090 protein (Brassica rapa) - STRING interaction network
"Bra002090" - AT2G17770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002090AT2G17770 (E=5e-019) ATBZIP27, FDP | ATBZIP27; transcription factor (184 aa)    
Predicted Functional Partners:
Bra022475
AT1G65480 (E=1e-087) FT | FT (FLOWERING LOCUS T); phosphatidylethanolamine binding / protein binding (175 aa)
       
 
  0.558
Bra004117
AT4G20370 (E=2e-085) TSF | TSF (TWIN SISTER OF FT); phosphatidylethanolamine binding (175 aa)
       
 
  0.558
Bra034357
AT2G27550 (E=5e-096) ATC | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding (175 aa)
       
 
  0.535
Bra028815
AT5G03840 (E=2e-090) TFL1, TFL-1 | TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding (179 aa)
       
 
  0.535
Bra012010
AT2G27550 (E=3e-095) ATC | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding (175 aa)
       
 
  0.535
Bra005783
AT5G03840 (E=1e-096) TFL1, TFL-1 | TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding (177 aa)
       
 
  0.535
Bra000506
AT2G27550 (E=4e-097) ATC | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding (175 aa)
       
 
  0.535
Bra023541
AT5G15850 (E=6e-052) COL1, ATCOL1 | COL1 (constans-like 1); transcription factor/ zinc ion binding (315 aa)
           
  0.452
Bra021464
AT3G02380 (E=4e-110) COL2 | COL2 (constans-like 2); transcription factor/ zinc ion binding (321 aa)
           
  0.452
Bra008669
AT5G15840 (E=2e-119) CO, FG | CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding (366 aa)
           
  0.452
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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