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Bra002100 protein (Brassica rapa) - STRING interaction network
"Bra002100" - AT2G17900 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002100AT2G17900 (E=2e-247) SDG37 | SDG37; zinc ion binding (483 aa)    
Predicted Functional Partners:
Bra018910
AT1G51450 (E=4e-139) | SPla/RYanodine receptor (SPRY) domain-containing protein (421 aa)
       
  0.873
Bra023908
AT3G21060 (E=3e-262) | transducin family protein / WD-40 repeat family protein (547 aa)
     
  0.763
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
     
  0.756
Bra041121
AT3G20740 (E=1e-011) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (71 aa)
     
  0.748
Bra035751
AT3G20740 (E=2e-183) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (379 aa)
     
  0.748
Bra035750
AT3G20740 (E=2e-094) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (298 aa)
     
  0.748
Bra035748
AT3G20740 (E=1e-150) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (379 aa)
     
  0.748
Bra023933
AT3G20740 (E=3e-209) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (369 aa)
     
  0.748
Bra022611
AT5G52820 (E=3e-271) | WD-40 repeat family protein / notchless protein, putative (476 aa)
     
  0.733
Bra009201
AT5G52820 (E=6e-204) | WD-40 repeat family protein / notchless protein, putative (480 aa)
     
  0.733
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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