STRINGSTRING
Bra002116 protein (Brassica rapa) - STRING interaction network
"Bra002116" - AT5G17920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002116AT5G17920 (E=0.0) ATCIMS, ATMETS, ATMS1 | ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ copper ion binding / methionine synthase (765 aa)    
Predicted Functional Partners:
Bra032750
AT4G13940 (E=4e-261) HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (485 aa)
     
 
  0.990
Bra028345
AT3G23810 (E=6e-260) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
     
 
  0.990
Bra014984
AT3G23810 (E=4e-271) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
     
 
  0.990
Bra001921
AT3G23810 (E=1e-272) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
     
 
  0.990
Bra041036
AT1G02500 (E=5e-207) SAM1, SAM-1, MAT1 | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (391 aa)
   
  0.967
Bra021241
AT3G17390 (E=3e-217) MTO3, SAMS3, MAT4 | MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (393 aa)
   
  0.967
SAMS
AT4G01850 (E=2e-222) SAM-2, MAT2 | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); copper ion binding / methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (393 aa)
   
  0.967
Bra023084
AT2G36880 (E=4e-220) MAT3 | MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (390 aa)
   
  0.956
Bra017219
AT2G36880 (E=3e-218) MAT3 | MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (390 aa)
   
  0.956
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
         
  0.956
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]