STRINGSTRING
Bra002118 protein (Brassica rapa) - STRING interaction network
"Bra002118" - AT5G17980 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra002118AT5G17980 (E=0.0) | C2 domain-containing protein (1050 aa)    
Predicted Functional Partners:
Bra036296
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (711 aa)
           
  0.606
Bra000897
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (718 aa)
           
  0.606
Bra031702
AT1G10140 (E=3e-049) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP031279 (InterPro-IPR016972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (166 aa)
           
  0.406
Bra019961
AT1G10140 (E=2e-042) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP031279 (InterPro-IPR016972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (170 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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