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Bra002119 protein (Brassica rapa) - STRING interaction network
"Bra002119" - AT5G17990 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002119AT5G17990 (E=1e-192) TRP1, pat1 | TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase (429 aa)    
Predicted Functional Partners:
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
 
  0.998
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
 
  0.998
Bra009130
AT5G05730 (E=1e-306) ASA1, TRP5, AMT1, WEI2 | ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1); anthranilate synthase (597 aa)
 
  0.998
Bra005864
AT5G05730 (E=3e-311) ASA1, TRP5, AMT1, WEI2 | ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1); anthranilate synthase (594 aa)
 
  0.998
Bra000473
AT2G29690 (E=5e-290) ASA2, ATHANSYNAB | ASA2 (ANTHRANILATE SYNTHASE 2); anthranilate synthase (1131 aa)
 
  0.998
Bra010980
AT1G25220 (E=6e-138) ASB1, TRP4, WEI7 | ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase (278 aa)
  0.991
Bra032783
AT1G25220 (E=3e-129) ASB1, TRP4, WEI7 | ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase (283 aa)
  0.990
Bra019813
AT1G74710 (E=9e-030) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (190 aa)
   
  0.987
Bra028753
AT1G07780 (E=6e-128) PAI1, TRP6 | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (276 aa)
 
 
  0.986
Bra013209
AT2G04400 (E=1e-188) | indole-3-glycerol phosphate synthase (IGPS) (402 aa)
 
 
  0.945
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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