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Bra002129 protein (Brassica rapa) - STRING interaction network
"Bra002129" - AT5G18070 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002129AT5G18070 (E=1e-239) DRT101 | DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular transferase, phosphotransferases / magnesium ion binding (545 aa)    
Predicted Functional Partners:
Bra038405
AT1G31070 (E=6e-279) | UDP-N-acetylglucosamine pyrophosphorylase-related (503 aa)
   
  0.955
Bra023160
AT1G31070 (E=3e-272) | UDP-N-acetylglucosamine pyrophosphorylase-related (476 aa)
   
  0.955
Bra005373
AT2G35020 (E=8e-245) | UTP--glucose-1-phosphate uridylyltransferase family protein (501 aa)
   
  0.955
Bra023537
AT5G15770 (E=4e-068) AtGNA1 | AtGNA1 (Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1); N-acetyltransferase/ glucosamine 6-phosphate N-acetyltransferase (159 aa)
   
 
  0.953
Bra008677
AT5G15770 (E=2e-069) AtGNA1 | AtGNA1 (Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1); N-acetyltransferase/ glucosamine 6-phosphate N-acetyltransferase (160 aa)
   
 
  0.953
Bra030030
AT1G24290 (E=8e-240) | AAA-type ATPase family protein (519 aa)
     
      0.908
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
 
  0.907
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
 
  0.907
Bra011157
AT4G30000 (E=6e-256) | dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative (525 aa)
   
 
  0.872
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
       
  0.808
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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