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Bra002133 protein (Brassica rapa) - STRING interaction network
"Bra002133" - AT5G18100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002133AT5G18100 (E=2e-081) CSD3 | CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (162 aa)    
Predicted Functional Partners:
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
     
  0.976
Bra034154
AT3G10920 (E=4e-114) MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (231 aa)
     
  0.972
Bra029879
AT3G10920 (E=2e-108) MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase ; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (231 aa)
     
  0.972
Bra029190
AT5G51100 (E=3e-135) FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (270 aa)
     
  0.972
Bra026503
AT5G23310 (E=4e-134) FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase (263 aa)
     
  0.972
Bra009670
AT5G23310 (E=1e-137) FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase (263 aa)
     
  0.972
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
     
 
  0.941
Bra036642
AT1G12520 (E=7e-057) ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone (219 aa)
   
0.939
Bra026968
AT1G12520 (E=2e-135) ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone (504 aa)
     
0.933
Bra016768
AT1G12520 (E=1e-130) ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone (316 aa)
     
0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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