STRINGSTRING
Bra002136 protein (Brassica rapa) - STRING interaction network
"Bra002136" - AT5G18130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002136AT5G18130 (E=3e-107) | unknown protein (276 aa)    
Predicted Functional Partners:
Bra036862
AT3G50800 (E=1e-049) | unknown protein (148 aa)
           
  0.581
Bra012887
AT3G50800 (E=3e-053) | unknown protein (156 aa)
           
  0.581
Bra031661
AT1G09320 (E=5e-201) | agenet domain-containing protein (497 aa)
           
  0.574
Bra018567
AT1G09320 (E=5e-197) | agenet domain-containing protein (507 aa)
           
  0.483
Bra004468
AT1G26540 (E=5e-049) | agenet domain-containing protein (458 aa)
           
  0.483
Bra027996
AT4G10270 (E=5e-025) | wound-responsive family protein (89 aa)
           
  0.448
Bra027995
AT4G10270 (E=2e-025) | wound-responsive family protein (185 aa)
           
  0.448
Bra027994
AT4G10270 (E=2e-032) | wound-responsive family protein (89 aa)
           
  0.448
Bra018121
AT4G10270 (E=1e-039) | wound-responsive family protein (88 aa)
           
  0.448
Bra010194
AT4G10270 (E=7e-030) | wound-responsive family protein (87 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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