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Bra002142 protein (Brassica rapa) - STRING interaction network
"Bra002142" - AT5G18210 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002142AT5G18210 (E=1e-107) | short-chain dehydrogenase/reductase (SDR) family protein (264 aa)    
Predicted Functional Partners:
Bra025025
AT5G46290 (E=8e-254) KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (470 aa)
     
  0.956
Bra022029
AT5G46290 (E=3e-244) KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (472 aa)
     
  0.956
Bra017565
AT5G46290 (E=8e-247) KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (470 aa)
     
  0.956
Bra015879
AT1G74960 (E=2e-248) FAB1, KAS2 | FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (542 aa)
     
  0.956
Bra013202
AT2G04540 (E=2e-230) | 3-oxoacyl-(acyl-carrier-protein) synthase II, putative (462 aa)
     
  0.956
Bra003777
AT1G74960 (E=8e-254) FAB1, KAS2 | FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (546 aa)
     
  0.956
Bra040296
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
   
  0.938
Bra029608
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
   
  0.938
Bra024170
AT4G29010 (E=2e-186) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (737 aa)
   
  0.938
Bra011076
AT4G29010 (E=0.0) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (722 aa)
   
  0.938
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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