STRINGSTRING
Bra002148 protein (Brassica rapa) - STRING interaction network
"Bra002148" - AT5G18270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002148AT5G18270 (E=3e-172) ANAC087 | ANAC087; transcription factor (336 aa)    
Predicted Functional Partners:
Bra038762
AT4G21705 (E=1e-235) | pentatricopeptide (PPR) repeat-containing protein (488 aa)
           
  0.470
Bra035726
AT4G06634 (E=9e-168) | zinc finger (C2H2 type) family protein (382 aa)
           
  0.470
Bra029186
AT4G06634 (E=1e-148) | zinc finger (C2H2 type) family protein (376 aa)
           
  0.470
Bra024909
AT2G01060 (E=8e-129) | myb family transcription factor (287 aa)
           
  0.465
Bra014348
AT2G01060 (E=6e-127) | myb family transcription factor (316 aa)
           
  0.465
Bra000114
AT2G28290 (E=0.0) SYD, CHR3 | SYD (SPLAYED); ATPase/ chromatin binding (3275 aa)
       
      0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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