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Bra002149 protein (Brassica rapa) - STRING interaction network
"Bra002149" - AT5G64640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002149AT5G64640 (E=2e-205) | pectinesterase family protein (493 aa)    
Predicted Functional Partners:
Bra000327
AT1G43080 (E=2e-163) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (474 aa)
       
  0.699
Bra040790
AT1G65570 (E=2e-147) | polygalacturonase, putative / pectinase, putative (399 aa)
       
  0.568
Bra040034
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.568
Bra040034.1-P
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.568
Bra040032
AT3G07820 (E=4e-216) | polygalacturonase 3 (PGA3) / pectinase (396 aa)
       
  0.568
Bra039462
AT3G42950 (E=2e-237) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (502 aa)
       
  0.568
Bra037680
AT2G43860 (E=4e-109) | polygalacturonase, putative / pectinase, putative (496 aa)
       
  0.568
Bra037678
AT2G43870 (E=3e-197) | polygalacturonase, putative / pectinase, putative (388 aa)
       
  0.568
Bra037677
AT2G43880 (E=5e-195) | polygalacturonase, putative / pectinase, putative (367 aa)
       
  0.568
Bra037676
AT2G43890 (E=1e-208) | polygalacturonase, putative / pectinase, putative (394 aa)
       
  0.568
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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