STRINGSTRING
Bra002152 protein (Brassica rapa) - STRING interaction network
"Bra002152" - AT5G18310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002152AT5G18310 (E=1e-053) | unknown protein (165 aa)    
Predicted Functional Partners:
Bra037483
AT5G48500 (E=4e-071) | unknown protein (163 aa)
           
  0.607
Bra020695
AT5G48500 (E=1e-072) | unknown protein (164 aa)
           
  0.607
Bra036167
AT5G48500 (E=3e-055) | unknown protein (160 aa)
           
  0.483
Bra035591
AT5G55850 (E=4e-023) NOI | NOI (80 aa)
           
  0.472
Bra028957
AT5G55850 (E=1e-020) NOI | NOI (81 aa)
           
  0.472
Bra002871
AT5G55850 (E=1e-017) NOI | NOI (84 aa)
           
  0.472
Bra004713
AT3G58840 (E=8e-039) | LOCATED IN- mitochondrion, plastid; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 9 growth stages; BEST Arabidopsis thaliana protein match is- myosin heavy chain-related (TAIR-AT1G06530.1); Has 122842 Blast hits to 54311 proteins in 2061 species- Archae - 1832; Bacteria - 13809; Metazoa - 62057; Fungi - 8845; Plants - 4054; Viruses - 676; Other Eukaryotes - 31569 (source- NCBI BLink). (307 aa)
           
  0.471
Bra018986
AT1G52760 (E=8e-176) | esterase/lipase/thioesterase family protein (328 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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