STRINGSTRING
Bra002158 protein (Brassica rapa) - STRING interaction network
"Bra002158" - AT5G18440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002158AT5G18440 (E=8e-076) | unknown protein (460 aa)    
Predicted Functional Partners:
Bra031460
AT1G61010 (E=0.0) CPSF73-I | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding (694 aa)
     
 
    0.885
Bra009712
AT5G23880 (E=0.0) EMB1265, CPSF100, ESP5, ATCPSF100 | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding (739 aa)
     
 
    0.874
Bra025635
AT1G77570 (E=2e-019) | DNA binding / transcription factor (140 aa)
           
  0.479
Bra029342
AT5G60990 (E=2e-236) | DEAD/DEAH box helicase, putative (RH10) (452 aa)
           
  0.474
Bra012988
AT5G60990 (E=2e-228) | DEAD/DEAH box helicase, putative (RH10) (454 aa)
           
  0.474
Bra016065
AT1G72320 (E=0.0) APUM23 | APUM23 (Arabidopsis Pumilio 23); RNA binding / binding (730 aa)
     
   
  0.429
Bra026724
AT1G16280 (E=4e-212) | DEAD/DEAH box helicase, putative (486 aa)
     
   
  0.404
Bra038629
AT5G63420 (E=0.0) emb2746 | emb2746 (embryo defective 2746); DNA binding / catalytic/ hydrolase (907 aa)
     
 
    0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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