STRINGSTRING
Bra002166 protein (Brassica rapa) - STRING interaction network
"Bra002166" - AT5G18525 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002166AT5G18525 (E=0.0) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (1596 aa)    
Predicted Functional Partners:
Bra040738
AT4G16520 (E=8e-060) ATG8F | ATG8F (autophagy 8f); microtubule binding (118 aa)
       
 
  0.905
Bra038481
AT4G16520 (E=2e-033) ATG8F | ATG8F (autophagy 8f); microtubule binding (82 aa)
       
 
  0.905
Bra029509
AT4G21980 (E=3e-059) APG8A, ATG8A | APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase (120 aa)
       
 
  0.905
Bra027227
AT3G15580 (E=4e-059) ATG8I, APG8H | APG8H (AUTOPHAGY 8H); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase/ microtubule binding (115 aa)
       
 
  0.905
Bra021303
AT1G62040 (E=9e-031) ATG8C | ATG8C (autophagy 8c); microtubule binding (83 aa)
       
 
  0.905
Bra020749
AT3G06420 (E=2e-058) ATG8H | ATG8H (autophagy 8h); microtubule binding (119 aa)
       
 
  0.905
Bra019407
AT4G21980 (E=1e-061) APG8A, ATG8A | APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase (124 aa)
       
 
  0.905
Bra018503
AT4G04640 (E=2e-150) ATPC1 | ATPC1; enzyme regulator (504 aa)
       
 
  0.905
Bra013578
AT4G21980 (E=7e-061) APG8A, ATG8A | APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase (122 aa)
       
 
  0.905
Bra013172
AT2G05630 (E=3e-062) ATG8D | autophagy 8d (APG8d) (119 aa)
       
 
  0.905
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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