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Bra002179 protein (Brassica rapa) - STRING interaction network
"Bra002179" - AT5G18680 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002179AT5G18680 (E=1e-174) AtTLP11 | AtTLP11 (TUBBY LIKE PROTEIN 11); phosphoric diester hydrolase/ transcription factor (399 aa)    
Predicted Functional Partners:
Bra032979
AT3G27060 (E=5e-184) TSO2 | TSO2 (TSO meaning ’ugly’ in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding (332 aa)
       
    0.640
Bra019279
AT3G27060 (E=1e-011) TSO2 | TSO2 (TSO meaning ’ugly’ in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding (99 aa)
       
    0.640
Bra014962
AT3G23580 (E=1e-182) RNR2, RNR2A | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase (343 aa)
       
    0.640
Bra012265
AT2G32295 (E=6e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; CONTAINS InterPro DOMAIN/s- EXS, C-terminal (InterPro-IPR004342); BEST Arabidopsis thaliana protein match is- EXS family protein / ERD1/XPR1/SYG1 family protein (TAIR-AT5G35730.1); Has 582 Blast hits to 577 proteins in 138 species- Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 177; Plants - 106; Viruses - 0; Other Eukaryotes - 76 (source- NCBI BLink). (213 aa)
       
    0.640
Bra038848
AT4G29950 (E=2e-040) | microtubule-associated protein (236 aa)
       
 
  0.633
Bra011154
AT4G29950 (E=3e-313) | microtubule-associated protein (794 aa)
       
 
  0.633
Bra002749
AT5G57210 (E=3e-291) | microtubule-associated protein-related (753 aa)
       
 
  0.633
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
         
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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