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Bra002185.1-P protein (Brassica rapa) - STRING interaction network
"Bra002185.1-P" - AT3G06320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002185.1-PAT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.996
Bra039066
AT3G27850 (E=5e-057) RPL12-C | RPL12-C (ribosomal protein l12-c); structural constituent of ribosome (189 aa)
   
  0.977
Bra033029
AT3G27830 (E=2e-053) RPL12-A, RPL12 | RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome (193 aa)
   
  0.977
Bra031791
AT4G37660 (E=3e-023) | ribosomal protein L12 family protein (152 aa)
   
  0.977
Bra025305
AT3G27830 (E=3e-051) RPL12-A, RPL12 | RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome (189 aa)
   
  0.977
Bra025304
AT3G27830 (E=8e-053) RPL12-A, RPL12 | RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome (191 aa)
   
  0.977
Bra023076
AT3G27840 (E=7e-040) RPL12-B | RPL12-B (ribosomal protein l12-b); structural constituent of ribosome (140 aa)
   
  0.977
Bra020783
AT3G06040 (E=1e-062) | ribosomal protein L12 family protein (189 aa)
   
  0.977
Bra017843
AT4G37660 (E=1e-062) | ribosomal protein L12 family protein (164 aa)
   
  0.977
Bra017760
AT4G36420 (E=5e-028) | ribosomal protein L12 family protein (171 aa)
   
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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