STRINGSTRING
Bra002188 protein (Brassica rapa) - STRING interaction network
"Bra002188" - AT5G18830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002188AT5G18830 (E=0.0) SPL7 | SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7); DNA binding / transcription factor (773 aa)    
Predicted Functional Partners:
Bra030860
AT1G55460 (E=1e-091) | Kin17 DNA-binding protein-related (387 aa)
       
 
  0.753
Bra011917
AT1G55460 (E=1e-091) | Kin17 DNA-binding protein-related (392 aa)
       
 
  0.753
Bra020328
AT5G59030 (E=2e-061) COPT1 | COPT1 (copper transporter 1); copper ion transmembrane transporter (164 aa)
           
  0.456
Bra002582
AT5G59030 (E=8e-060) COPT1 | COPT1 (copper transporter 1); copper ion transmembrane transporter (163 aa)
           
  0.456
Bra020119
AT5G20650 (E=7e-062) COPT5 | COPT5; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (143 aa)
           
  0.448
Bra002318
AT5G20650 (E=5e-066) COPT5 | COPT5; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (144 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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