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Bra002195 protein (Brassica rapa) - STRING interaction network
"Bra002195" - AT5G18940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002195AT5G18940 (E=4e-171) | Mo25 family protein (345 aa)    
Predicted Functional Partners:
Bra038106
AT1G53165 (E=9e-303) ATMAP4K ALPHA1 | ATMAP4K ALPHA1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (832 aa)
       
  0.953
Bra027269
AT1G53165 (E=1e-287) ATMAP4K ALPHA1 | ATMAP4K ALPHA1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (679 aa)
       
  0.953
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
         
  0.922
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
         
  0.922
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
         
  0.922
Bra004366
AT1G69220 (E=4e-175) SIK1 | SIK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (860 aa)
       
  0.912
Bra002367
AT5G21222 (E=0.0) | protein kinase family protein (838 aa)
       
  0.798
Bra039858
AT4G14480 (E=7e-206) | protein kinase family protein (483 aa)
       
  0.786
Bra035282
AT4G10730 (E=6e-160) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (592 aa)
       
  0.786
Bra035132
AT1G79640 (E=1e-289) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (594 aa)
       
  0.786
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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