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Bra002196 protein (Brassica rapa) - STRING interaction network
"Bra002196" - AT5G18950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002196AT5G18950 (E=2e-167) | pentatricopeptide (PPR) repeat-containing protein (502 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
 
    0.923
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
    0.923
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
     
 
    0.923
Bra000581
AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)
     
 
    0.923
Bra008663
AT5G15900 (E=6e-173) | unknown protein (328 aa)
           
  0.581
Bra039182
AT3G02560 (E=4e-095) | 40S ribosomal protein S7 (RPS7B) (208 aa)
           
  0.534
Bra021431
AT3G02560 (E=1e-094) | 40S ribosomal protein S7 (RPS7B) (351 aa)
           
  0.534
Bra001052
AT3G02560 (E=3e-094) | 40S ribosomal protein S7 (RPS7B) (191 aa)
           
  0.534
Bra006340
AT5G16130 (E=4e-100) | 40S ribosomal protein S7 (RPS7C) (190 aa)
           
  0.505
Bra008664
AT5G15890 (E=8e-195) | unknown protein (450 aa)
           
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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