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Bra002208 protein (Brassica rapa) - STRING interaction network
"Bra002208" - AT5G19080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002208AT5G19080 (E=2e-123) | zinc finger (C3HC4-type RING finger) family protein (374 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
       
    0.796
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
       
    0.796
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
       
    0.796
Bra040749
AT1G47128 (E=1e-226) RD21, RD21A | RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase (457 aa)
       
 
  0.627
Bra038208
AT3G19390 (E=4e-179) | cysteine proteinase, putative / thiol protease, putative (441 aa)
       
 
  0.627
Bra038206
AT3G19390 (E=2e-198) | cysteine proteinase, putative / thiol protease, putative (450 aa)
       
 
  0.627
Bra035339
AT5G43060 (E=8e-094) | cysteine proteinase, putative / thiol protease, putative (443 aa)
       
 
  0.627
Bra033657
AT5G43060 (E=5e-224) | cysteine proteinase, putative / thiol protease, putative (460 aa)
       
 
  0.627
Bra022418
AT3G19390 (E=4e-215) | cysteine proteinase, putative / thiol protease, putative (450 aa)
       
 
  0.627
Bra019982
AT1G09850 (E=1e-215) XBCP3 | XBCP3 (xylem bark cysteine peptidase 3); cysteine-type endopeptidase/ cysteine-type peptidase (443 aa)
       
 
  0.627
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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