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Bra002215 protein (Brassica rapa) - STRING interaction network
"Bra002215" - AT5G19130 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002215AT5G19130 (E=0.0) | GPI transamidase component family protein / Gaa1-like family protein (695 aa)    
Predicted Functional Partners:
Bra029625
AT3G07140 (E=4e-291) | GPI transamidase component Gpi16 subunit family protein (637 aa)
     
  0.997
Bra018604
AT1G08750 (E=3e-198) | GPI-anchor transamidase, putative (388 aa)
     
  0.996
Bra029630
AT3G07180 (E=3e-268) | GPI transamidase component PIG-S-related (603 aa)
     
  0.995
Bra026998
AT1G63110 (E=4e-212) | cell division cycle protein-related (477 aa)
     
  0.995
Bra031639
AT1G08720 (E=0.0) EDR1, ATEDR1 | EDR1 (ENHANCED DISEASE RESISTANCE 1); MAP kinase kinase kinase/ kinase/ protein serine/threonine/tyrosine kinase (1156 aa)
     
  0.983
Bra008568
AT5G17250 (E=0.0) | catalytic/ transferase (925 aa)
     
  0.948
Bra038256
AT3G20210 (E=5e-180) DELTA-VPE, DELTAVPE | DELTA-VPE; cysteine-type endopeptidase (524 aa)
       
  0.944
Bra036650
AT1G62710 (E=6e-247) BETA-VPE, BETAVPE | BETA-VPE (BETA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase (485 aa)
       
  0.944
Bra035804
AT3G20210 (E=3e-202) DELTA-VPE, DELTAVPE | DELTA-VPE; cysteine-type endopeptidase (466 aa)
       
  0.944
Bra011398
AT4G32940 (E=1e-234) GAMMA-VPE, GAMMAVPE | GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase (487 aa)
       
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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