STRINGSTRING
Bra002216 protein (Brassica rapa) - STRING interaction network
"Bra002216" - AT5G19140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002216AT5G19140 (E=5e-124) ATAILP1, AILP1 | AILP1 (236 aa)    
Predicted Functional Partners:
Bra021277
AT3G17840 (E=1e-149) RLK902 | RLK902; ATP binding / kinase/ protein serine/threonine kinase (632 aa)
       
      0.615
Bra025774
AT1G19840 (E=9e-068) | auxin-responsive family protein (151 aa)
           
  0.533
Bra014140
AT1G48480 (E=3e-254) RKL1 | RKL1; ATP binding / kinase/ protein serine/threonine kinase (638 aa)
       
      0.504
Bra008611
AT5G16590 (E=1e-250) LRR1 | LRR1; ATP binding / kinase/ protein serine/threonine kinase (617 aa)
       
      0.504
Bra008209
AT1G75590 (E=1e-061) | auxin-responsive family protein (151 aa)
           
  0.503
Bra034732
AT3G12775 (E=5e-089) | ubiquitin-conjugating enzyme family protein (383 aa)
           
  0.477
Bra001469
AT3G12775 (E=1e-089) | ubiquitin-conjugating enzyme family protein (374 aa)
           
  0.477
Bra016493
AT1G19840 (E=5e-055) | auxin-responsive family protein (146 aa)
           
  0.414
Bra015831
AT1G75590 (E=8e-066) | auxin-responsive family protein (145 aa)
           
  0.414
Bra022250
AT3G17840 (E=2e-253) RLK902 | RLK902; ATP binding / kinase/ protein serine/threonine kinase (631 aa)
       
      0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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