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Bra002225 protein (Brassica rapa) - STRING interaction network
"Bra002225" - AT5G19300 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002225AT5G19300 (E=2e-154) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Protein of unknown function DUF171 (InterPro-IPR003750); Has 4766 Blast hits to 2044 proteins in 217 species- Archae - 72; Bacteria - 102; Metazoa - 2264; Fungi - 372; Plants - 195; Viruses - 4; Other Eukaryotes - 1757 (source- NCBI BLink). (383 aa)    
Predicted Functional Partners:
Bra033149
AT3G57150 (E=6e-167) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
   
      0.925
Bra008756
AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter (522 aa)
   
      0.925
Bra003270
AT3G57150 (E=2e-218) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
   
      0.925
Bra028669
AT5G08180 (E=3e-077) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
     
      0.912
Bra009327
AT5G08180 (E=1e-070) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (156 aa)
     
      0.912
Bra005975
AT5G08180 (E=7e-077) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
     
      0.912
Bra036427
AT3G03920 (E=2e-050) | Gar1 RNA-binding region family protein (203 aa)
     
      0.808
Bra023666
AT3G03920 (E=6e-048) | Gar1 RNA-binding region family protein (199 aa)
     
      0.808
Bra015590
AT3G03920 (E=1e-026) | Gar1 RNA-binding region family protein (216 aa)
     
      0.808
Bra006443
AT3G03920 (E=2e-050) | Gar1 RNA-binding region family protein (199 aa)
     
      0.808
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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