STRINGSTRING
Bra002229 protein (Brassica rapa) - STRING interaction network
"Bra002229" - AT5G19340 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002229AT5G19340 (E=4e-054) | unknown protein (257 aa)    
Predicted Functional Partners:
Bra024007
AT4G31450 (E=3e-169) | zinc finger (C3HC4-type RING finger) family protein (467 aa)
           
  0.530
Bra026415
AT4G26630 (E=3e-130) | EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species- Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source- NCBI BLink). (835 aa)
           
  0.505
Bra014847
AT3G54030 (E=2e-270) | protein kinase family protein (490 aa)
           
  0.505
Bra010668
AT4G39680 (E=9e-158) | SAP domain-containing protein (597 aa)
           
  0.504
Bra011842
AT4G39680 (E=7e-119) | SAP domain-containing protein (329 aa)
           
  0.483
Bra002880
AT5G55660 (E=4e-161) | LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species- Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source- NCBI BLink). (865 aa)
           
  0.483
Bra019861
AT1G11360 (E=4e-117) | universal stress protein (USP) family protein (253 aa)
           
  0.474
Bra040812
AT1G48660 (E=1e-240) | auxin-responsive GH3 family protein (573 aa)
           
  0.472
Bra025777
AT1G19870 (E=5e-241) iqd32 | iqd32 (IQ-domain 32); calmodulin binding (744 aa)
           
  0.455
Bra038644
AT5G63550 (E=5e-108) | EXPRESSED IN- guard cell; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G48710.1). (490 aa)
           
  0.439
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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